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< rcurtin[m]1>
shrit: check out `diff -Nau output_passing.txt output_failing.txt`... the max kernel values are very different even as early as the 31st score:
< rcurtin[m]1>
I think we need to see which way the tree is choosing to recurse... do you want to also print tree information in `Score()`? you can do this:
< rcurtin[m]1>
and then in `BaseCase()` you can print `queryIndex` and `referenceIndex` too
< rcurtin[m]1>
that tree printing idea will print things like... `50c100` which is good enough for a unique identifier for tree nodes... the first number is the point that is the root of that subtree and the second number is the total number of descendant points it contains
< rcurtin[m]1>
in any case, if you print that information (or something equivalent to it), we'll be able to see if the recursion is going a different direction
< rcurtin[m]1>
I strongly doubt the different Armadillo version makes any difference (9.800.4 vs. 9.800.3)
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< shrit[m]>
I will take all of this into consideration, I will let you know about the results tomorrow.
< shrit[m]>
I will try another one with a different armadillo version such as 8.400 and the same as the one on viking
< rcurtin[m]1>
there should be no need to try a different armadillo version... I really don't think it will make a difference